Publication Activity

Preprints


Translocation and duplication from CRISPR-Cas9 editing in Arabidopsis thaliana

Lynagh, P.G., Inagaki, S., Amundson, K.R., Marimuthu, M., Pike, B.R., Henry, I.M., Tan, E.H., Comai, L. (2018) bioRXiv, doi: https://doi.org/10.1101/400507

Publications


Biased removal and loading of centromeric histone H3 during reproduction underlies uniparental genome elimination

4. Marimuthu, M. P. A., Marutachalam, R., Bondada, R., Kuppu, S., Tan, E.H., Britt, A., Chan., S.R., Comai., L. (2021) Accepted in Science Advances: bioRXiv, doi: https://doi.org/10.1101/2021.02.24.432754

Late Blight Resistance Profiles of Elite Potato Germplasm in the United States

Brown-Donovanm K.M., Porter, G.A., and Tan, E. H.(2021) Am. J. Potato Res. ; https://doi.org/10.1007/s12230-021-09837-0 [article]

Pangenomic Analysis of Dickeya dianthicola Strains Reveals the Outbreak of Blackleg and Soft Rot of Potato in USA.

Ge, T., Jiang, H., Tan, E. H., Johnson, S. B., Larkin, R.P., Charkowski, A. O., Secor, G., Hao. J. (2021) Plant Disease , doi: 10.1094/PDIS-03-21-0587-RE

Rare instances of haploid inducer DNA in potato dihaploids and ploidy-dependent genome instability.

Amundson, K. R., Ordonez, B., Santayana, M., Nganga, M. L., Henry, I. M. and Bonierbale, M. and Khan, A., Tan, E. H. and Comai, L. (2021) The Plant Cell ; https://doi.org/10.1093/plcell/koab100 [article]

Genomic Outcomes of Haploid Induction Crosses in Potato (Solanum tuberosum L.)

Amundson, K.R., Ordonez, B., Santayana, M., Tan, E.H., Henry, I.M., Mihovilovich, M., Bonierbale, M., Comai L. (2020) Genetics February 1, 2020 vol. 214 no. 2 369-380; https://doi.org/10.1534/genetics.119.302843 [article]

Haploid Induction and Genome Instability

Comai L., Tan E.H. (2019) Trends in Genetics, doi: 10.1016/j.tig.2019.07.005 [article]

Detection of Chromothripsis in Plants.

Henry I.M., Comai L., Tan E.H. (2018) In: Pellestor F. (eds) Chromothripsis. Methods in Molecular Biology, Vol 1769, pp 119-132 doi: 10.1007/978-1-4939-7780-2_8

Mutation of Arabidopsis SMC4 identifies condensin as a corepressor of pericentromeric transposons and conditionally expressed genes.

Wang, J., Blevins, T., Podicheti R., Haag, J.R., Tan, E.H., Wang, F., Pikaard, C.S. (2017) Mutation of Arabidopsis SMC4 identifies condensin as a corepressor of pericentromeric transposons and conditionally expressed genes. Genes and Development, 31:1-16 doi: 10.1101/gad.301499.117

Chromosome Dosage Analysis in Plants Using Whole Genome Sequencing.

Tan, E.H., Comai, L., Henry, I.M. (2016) Chromosome Dosage Analysis in Plants Using Whole Genome Sequencing. Bio-protocol, doi: 10.21769/BioProtoc.1854. [Open access link]

Catastrophic chromosomal restructuring during genome elimination in plants.

Tan, E.H., Henry, I.M., Bradnam, K., Mandakova, T., Marimuthu, M., Ravi, M., Korf, I., Lysak, M., Comai, L., Chan, S.W.L. (2015) Catastrophic chromosomal restructuring during genome elimination in plants. eLife, doi: 10.7554/eLife.06516. [Open access link]

Point mutation in the centromeric histone induce post zygotic incompatibility and uniparental inheritance.

Kuppu, S., Tan, E.H., Nguyen, H., Comai, L., Chan, S.W.L., Britt, A.B. (2015) Point mutation in the centromeric histone induce post zygotic incompatibility and uniparental inheritance. PLOS Genetics, doi: 10.1371/journal.pgen.1005494. [Open access link]

Naturally occurring differences in CENH3 affect chromosome segregation in zygotic mitosis of hybrids.

Maheshwari, S., Tan, E.H., Comai, L., Chan, S.W.L. (2015). Naturally occurring differences in CENH3 affect chromosome segregation in zygotic mitosis of hybrids. PLOS Genetics, doi: 10.1371/journal.pgen.1004970. [Open access link]

A haploid genetics toolbox for Arabidopsis thaliana.

Ravi, M.*, Marimuthu, M.*, Tan, E.H.*, Maheshwari, M.*, Henry, I.M., Marin-Rodriguez, B., Urtecho, G., Tan, J., Thornhill, K., Zhu, F., Panoli, A., Sundaresan, V., Britt, A.B., Comai, L., Chan, S.W.L. (2014 - *Equal contribution) A haploid genetics toolbox for Arabidopsis thaliana. Nature Communications 5:5334, doi: 10.1038/ncomms6334. [Open archive link]

Functional consequences of subunit diversity in RNA Polymerase II and V.

Tan, E.H., Blevins, T., Ream, T.S. and Pikaard, C.S. (2012) Functional consequences of subunit diversity in RNA Polymerase II and V. Cell Reports, doi: 10.1016/j.celrep.2012.01.004. [Open access link]

An atypical epigenetic mechanism affects uniparental expression of Pol IV-dependent siRNAs.

Mosher, A. R., Tan, E.H., Shin, J., Fischer, R.L., Pikaard, C.S., Baulcombe, D.C. (2011) An atypical epigenetic mechanism affects uniparental expression of Pol IV-dependent siRNAs. PLOS ONE, doi: 10.1371/journal.pone.0025756. [Open access link]

DNA repair proteins are directly involved in regulation of gene expression during plant Immune Response.

Song, J., Durrant, W.E., Wang, S., Yan, S., Tan, E.H., Dong, X. (2011) DNA repair proteins are directly involved in regulation of gene expression during plant Immune Response. Cell Host & Microbe, 9(2): 115-124, doi: 10.1016/j.chom.2011.01.011 [Open archive link]